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Reduced Isothermal-Isobaric Ensembles

The identity used to derive the virial form of the path integral pressure estimator [13, 6]

  equation1169

assumes that the surface terms generated by the implied integration by parts vanish. This assumption is only valid if the size of the path integral polymer chain is small compared to the system parallelpiped. If this assumption is not valid, additional normal modes beyond the cyclic polymer centers of masses, the tex2html_wrap_inline5068 , must be introduced

equation1183

where tex2html_wrap_inline4874 is the tex2html_wrap_inline5072 mode and tex2html_wrap_inline5074 is the force on that mode ( tex2html_wrap_inline5076 ). This more general form of the identity can also be expressed using multiple level staging variables [1] by simply taking tex2html_wrap_inline4874 to be the tex2html_wrap_inline5072 ``end point bead'' [1] as opposed to the tex2html_wrap_inline5072 normal mode. The one end point bead staging form of the identity is exactly Eq. (5.1) with the centroid replaced by the single end point bead, tex2html_wrap_inline5084 , of the one stage transformation. Finally, if the polymer chain molecule is large compared to the system parallelpiped, the image approximation to the free particle propagator also must be introduced (see Appendix B)[40, 41].

The disadvantage of working with the primitive form of the pressure estimator as opposed to the virial form is that the variance of the primitive estimator diverges as the number of discretizations, M, goes to infinity[13]. In practice, M is finite and indeed is taken just large enough that the path integral can be said to have converged. Therefore, the variance of the virial estimator is generally found to be within a factor of two of the primitive estimator even in problems involving large numbers of discretizations, tex2html_wrap_inline5090 . In fact, it is recommended that both estimators be tabulated. Deviations of the virial from the primitive estimator can indicate violations of the conditions of the proof (or more likely poor convergence of the simulation).

In general, the size of the path integral polymer chains is small compared to the system parallelpiped. The preceding discussion should make clear that the complications of avoiding this limit are such that studying a larger system is the best recourse. It is, therefore, formally and practically possible to generate configurations in the isothermal isobaric ensemble by assuming the first mode, only (end point or centroid), is coupled to the volume. This approximation is equivalent to the finite polymer size approximation because limits of integration of the first mode, only, are, in this approximation, bound by the volume. That is, the dependence of the canonical partition function on the volume arises only through the spatial variation of the first mode of each psuedomolecule.

The equations of motion necessary to generate the isotropic isothermal-isobaric ensemble assuming that the polymer chains are small compared to the volume are

  eqnarray1213

The Eqs. (5.3) have the conserved quantity

  eqnarray1322

The equations of motion necessary to generate the full flexible isothermal-isobaric ensemble assuming that the polymer chains are small compared to the volume are

   eqnarray1347

Eqs. (5.5) have the conserved quantity

  eqnarray1456

At present, there is no overiding theoretical reason to prefer the reduced methods (first mode volumetric scaling) over the full methods (all mode volumetric scaling) unless M is taken excessively large. The computer time necessary to evolve a given system is the same for both types of schemes. However, the convergence of the reduced methods will, in general, be more rapid.


next up previous
Next: Symplectic Numerical Integration Up: Molecular dynamics algorithms for Previous: The Partition function and

Mark Tuckerman
Fri May 2 11:23:33 EDT 1997
Reduced Isothermal-Isobaric Ensembles next up previous
Next: Symplectic Numerical Integration Up: Molecular dynamics algorithms for Previous: The Partition function and

Reduced Isothermal-Isobaric Ensembles

The identity used to derive the virial form of the path integral pressure estimator [13, 6]

  equation1169

assumes that the surface terms generated by the implied integration by parts vanish. This assumption is only valid if the size of the path integral polymer chain is small compared to the system parallelpiped. If this assumption is not valid, additional normal modes beyond the cyclic polymer centers of masses, the tex2html_wrap_inline5068 , must be introduced

equation1183

where tex2html_wrap_inline4874 is the tex2html_wrap_inline5072 mode and tex2html_wrap_inline5074 is the force on that mode ( tex2html_wrap_inline5076 ). This more general form of the identity can also be expressed using multiple level staging variables [1] by simply taking tex2html_wrap_inline4874 to be the tex2html_wrap_inline5072 ``end point bead'' [1] as opposed to the tex2html_wrap_inline5072 normal mode. The one end point bead staging form of the identity is exactly Eq. (5.1) with the centroid replaced by the single end point bead, tex2html_wrap_inline5084 , of the one stage transformation. Finally, if the polymer chain molecule is large compared to the system parallelpiped, the image approximation to the free particle propagator also must be introduced (see Appendix B)[40, 41].

The disadvantage of working with the primitive form of the pressure estimator as opposed to the virial form is that the variance of the primitive estimator diverges as the number of discretizations, M, goes to infinity[13]. In practice, M is finite and indeed is taken just large enough that the path integral can be said to have converged. Therefore, the variance of the virial estimator is generally found to be within a factor of two of the primitive estimator even in problems involving large numbers of discretizations, tex2html_wrap_inline5090 . In fact, it is recommended that both estimators be tabulated. Deviations of the virial from the primitive estimator can indicate violations of the conditions of the proof (or more likely poor convergence of the simulation).

In general, the size of the path integral polymer chains is small compared to the system parallelpiped. The preceding discussion should make clear that the complications of avoiding this limit are such that studying a larger system is the best recourse. It is, therefore, formally and practically possible to generate configurations in the isothermal isobaric ensemble by assuming the first mode, only (end point or centroid), is coupled to the volume. This approximation is equivalent to the finite polymer size approximation because limits of integration of the first mode, only, are, in this approximation, bound by the volume. That is, the dependence of the canonical partition function on the volume arises only through the spatial variation of the first mode of each psuedomolecule.

The equations of motion necessary to generate the isotropic isothermal-isobaric ensemble assuming that the polymer chains are small compared to the volume are

  eqnarray1213

The Eqs. (5.3) have the conserved quantity

  eqnarray1322

The equations of motion necessary to generate the full flexible isothermal-isobaric ensemble assuming that the polymer chains are small compared to the volume are

   eqnarray1347

Eqs. (5.5) have the conserved quantity

  eqnarray1456

At present, there is no overiding theoretical reason to prefer the reduced methods (first mode volumetric scaling) over the full methods (all mode volumetric scaling) unless M is taken excessively large. The computer time necessary to evolve a given system is the same for both types of schemes. However, the convergence of the reduced methods will, in general, be more rapid.


next up previous
Next: Symplectic Numerical Integration Up: Molecular dynamics algorithms for Previous: The Partition function and

Mark Tuckerman
Fri May 2 11:23:33 EDT 1997